Selected publications
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Open access
Pharky, Phedro, Phractured, and StagePhright: complete genome sequences of four EK2 cluster Microbacterium phages
Gurney, S. M. R., Gupta, M., Reddy, D., Zacharias, G., Jomy, A. S., Smith, C. J., Drexel University SEA-PHAGE annotators 2020, Drexel University SEA-PHAGES annotators 2021, McDonald, M. T. & Condon, B. M., 17 Jul 2026, (E-pub ahead of print) In: Microbiology Resource Announcements. p. 1-4 4 p.Research output: Contribution to journal › Article › peer-review
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Open access
Unphazed and Phogo: complete genome sequences of two EK1 cluster Podoviridae Microbacterium phages containing putative purple acid phosphatase genes
Condon, B. M., Ariel, J. D., Godshall, S. L., Patel, D., Drexel University SEA-PHAGE annotators 2020, McDonald, M. T. & Gurney, S. M. R., 3 Aug 2026, (E-pub ahead of print) In: Microbiology Resource Announcements. Ahead of Print, p. 1-5 5 p.Research output: Contribution to journal › Article › peer-review
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Open access
An inclusive Research and Education Community (iREC) model to facilitate undergraduate science education reform
Monti, D. L., Gill, J. C., Adair, T. L., Adams, S. D., Ahumada-Santos, Y. P., Amaya, I., Anders, K., Anderson, J. R., Antunes, M. S., Ayuk, M., Baliraine, F., Bates, T. C., Beyer, A. R., Bhalla, S., Bouklas, T., Bullock, S. K., Butela, K. A., Byrum, C., Caruso, S. M. & Chong, R. & 96 others, , 21 Aug 2024, In: Frontiers in Education. 9, 16 p., 1442318.Research output: Contribution to journal › Article › peer-review
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Course-based undergraduate research experiences are a viable approach to increase access to research experiences in biology
Smith, K. P. W., Waddell, E. A., Dean, A. N., Gurney, S. M. R., Anandan, S., Kabnick, K., Little, J., McDonald, M., Mohan, J., Marenda, D. R. & Stanford, J. S., 1 Jun 2023, In: Journal of Biological Education. 57, 3, p. 618-632 15 p.Research output: Contribution to journal › Article › peer-review
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Open access
Models of classroom assessment for course-based research experiences
Hanauer, D. I., Zhang, T., Graham, M. J., Adams, S. D., Ahumada-Santos, Y. P., Alvey, R. M., Antunes, M. S., Ayuk, M. A., Elena Báez-Flores, M., Bancroft, C. T., Bates, T. C., Bechman, M. J., Behr, E., Beyer, A. R., Bortz, R. L., Bowder, D. M., Briggs, L. A., Brown-Kennerly, V., Buckholt, M. A. & Bullock, S. K. & 124 others, , 28 Nov 2023, In: Frontiers in Education. 8, 20 p., 1279921.Research output: Contribution to journal › Article › peer-review
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Open access
Crowdsourcing biocuration: the Community Assessment of Community Annotation with Ontologies (CACAO)
Ramsey, J., McIntosh, B., Renfro, D., Aleksander, S., LaBonte, S., Ross, C., Zweifel, A., Liles, N., Farrar, S., Gill, J., Erill, I., Ades, S., Berardini, T., Bennet, J., Brady, S., Britton, R., Carbon, S., Caruso, S., Clements, D. & Dalia, R. & 28 others, , 28 Oct 2021, In: PLoS Computational Biology. 17, 10, 13 p., e1009463.Research output: Contribution to journal › Article
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Open access
Genomic diversity of bacteriophages infecting Microbacterium spp.
Jacobs-Sera, D., Abad, L. A., Alvey, R. M., Anders, K. R., Aull, H. G., Bhalla, S. S., Blumer, L. S., Bollivar, D. W., Bonilla, J. A., Butela, K. A., Coomans, R. J., Cresawn, S. G., D'Elia, T., Diaz, A., Divens, A. M., Edgington, N. P., Frederick, G. D., Gainey, M. D., Garlena, R. A. & Grant, K. W. & 35 others, , 2020, In: PLoS One. 15, 6, 41 p., e0234636.Research output: Contribution to journal › Article › peer-review
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Open access
Complete genome sequences of 12 B1 cluster mycobacteriophages, Gareth, JangoPhett, Kailash, MichaelPhcott, PhenghisKhan, Phleuron, Phergie, PhrankReynolds, PhrodoBaggins, Phunky, Vaticameos, and Virapocalypse
Apellido, K. A., Balchander, D., Erlich, M. C., Gocal, J. K., Gocal, W. A., Haile, S., Kang, A. K., Koduri, S., Natrajan, M., Parikh, A. A., Tata, R. K., Walor, T. A., Wong, B. M., Nako, S., Tran, T., Islam, E., Mammen, M. P., Drexel University SEA-PHAGES annotators 2016, Ball, S. L. & Bollivar, D. W. & 9 others, , 21 Feb 2019, In: Microbiology Resource Announcements. 8, 8, 3 p.Research output: Contribution to journal › Article › peer-review
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Open access
Complete genome sequences of seven EA cluster microbacteriophages, Bustleton, MillyPhilly, Riyhil, Phriends, Pherbot, PrincePhergus, and TinSulphur
Nguyen Quach, A. M., Varghese, A. E., Siddiq, K., Pappano, I. G., Thaha, A., Marcelis, T. A., Feruku, B., Vindyala, A., Mohamed, R., Johnson, K. A., Hakim, S., Sekar, S., Vinnakota, P., Borsha, N. H., McKenzie, R., Ailani, S. S., Patel, S., Beggarly, V. A., Drexel University SEA-PHAGES annotators 2019 & McDonald, M. T. & 3 others, , 14 Nov 2019, In: Microbiology Resource Announcements. 8, 46, 3 p.Research output: Contribution to journal › Article › peer-review
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Open access
Complete genome sequence of cluster J mycobacteriophage Superphikiman
Pradhan, P., Nako, S., Tran, T., Aluri, L. S., Anandarajan, D., Betini, N., Bhatt, S. D., Chengalvala, S., Cox, N. E., Delvadia, B. P., Desai, A. S., Devaney, A. M., Doyle, B. K., Edgerton, A. O., Erlich, M. C., Fitzpatrick, K. C., Gajjar, E. A., Ganguly, A., Gill, R. S. & Good, P. M. & 41 others, , 1 Feb 2018, In: Genome Announcements. 6, 5, 2 p.Research output: Contribution to journal › Article › peer-review