Single-molecule Biophysics and Fluorescence Spectroscopy Lab

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Research

Most of our knowledge in Biology, Chemistry and Physics is derived from ensembles of molecules with the inherent assumption that under identical conditions molecules of identical composition behave more or less the same way. However, recent findings suggest a certain degree of molecular individualism so that molecules of the same species may follow quite different paths during transition from one state to another. Thus, single-molecule techniques provide novel insights into how molecules and systems behave, having the advantage that spatial and temporal averaging is avoided, temporal synchronisation is not necessary and novel phenomena, which otherwise are averaged and remain hidden in ensembles, may be discovered. Our aim is to monitor, in real-time, the behaviour of individual biological molecules and complexes, in vitro and in live cells. By combining the dynamic information obtained at the single-molecule or single-complex level with structural and biochemical analyses, we hope to create "molecular movies" of biological processes and from them obtain a deeper understanding of these processes. Although potentially any biological molecule is a target for single-molecule studies, currently we focus our interest in areas outlined in the scheme below. To learn more a particular area click the table links.

   

DNA processing machinery

Organization and function of structure-specific endonucleases: Single-molecule studies of fluorescently labeled NER complexes

Co-transcriptional RNA folding

Single-molecule stepwise transcription: A novel framework to study co-transcriptional folding dynamics

RNA-mediated gene regulation

Molecular basis of gene regulation on the glycine riboswitch by single-molecule approaches

(coming soon)

Protein misfolding and aggegation

Molecular basis of the early-stage interaction between the amyloid polypeptide and the ABAD protein.

(Under construction)

Single-molecule studies on "crowded systems"

Single-molecule multicascade imaging (Sm-MCI)

(under construction)

Single molecule hybrid techniques

Combining force and fluorescence (Sm-2F)

(under construction)

Biotechnology I: Next generation biomolecular probes

Excited-state proton transfer probes as hydrogen-bonding and enrivonmental sensors in biological process

(under construction)

Biotechnology II: RNA dendrimers

Novel RNA-based dendrimers with real-time tunable shape,size and properties: potential biotechnological applications

(under construction)

 

 

 

 

 

 

 

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